Centre Advanced Histology Microscopy online resources

We provide resources online for Centre for Advanced Histology and Microscopy workshops, analysis software, and online learning

Recordings available via our YouTube page

CAHM (Centre for Advanced Histology and Microscopy) Workshop content 

Intro to OPAL mIHC 

An introduction to how to perform multiplex immunohistochemistry using OPAL staining 

FIJI for Beginners 

Learn how to open and visualise microscopy data using FIJI 

FIJI for Quantification 

Learn how to extract quantitative data using FIJI 

Online resources 

Spectraviewer 

Look up excitation and emission spectra for each of your fluorophores (Thermo Fisher fluorophores) 

FPbase 

Look up all details about fluorescent proteins (Ex, Em, EC, QY, Brightness, pKa, lifetime, photostability, sequence) 

Nyquist calculator 

Work out the correct sampling rate for your experiment 

Analysis software 

Imaris 

Online tutorials and webinars on how to use Imaris 

Volocity 

Online tutorials on how to use Volocity 

Arivis 

Online tutorials on how to use Arivis 

Halo/InForm 

Akoya academy, webinars in sample prep and image analysis of mIHC 

Zeiss software   

Download the lite version of Zen Blue or Zen Black 

Leica software 

Download the lite version of LAS X 

Olympus 

Download software for opening files from confocal and slide scanners 

Nikon 

Download NIS Elements viewer 

FIJI (Image J) 

Download FIJI for Windows, MacOS, Linux 

QuPath 

Download QuPath 

Online learning 

iBiology Microscopy series 

MyScope Microscopy training 

Leica Science Lab 

Zeiss Education in Microscopy 

Nikon MicroscopyU 

Olympus Microscopy Resource Centre